2016 Conference USA Leaders Penalties - Games at Home Only through 01/09/2017
| Name | G | Pen. | Yards | Pen./G | Yards/G | |
|---|---|---|---|---|---|---|
| 1 | Old Dominion | 6 | 24 | 199 | 4.0 | 33.2 |
| 1 | UTEP | 7 | 28 | 235 | 4.0 | 33.6 |
| 1 | Florida Atlantic | 6 | 24 | 207 | 4.0 | 34.5 |
| 4 | Louisiana Tech | 5 | 22 | 243 | 4.4 | 48.6 |
| 5 | Middle Tennessee | 5 | 24 | 206 | 4.8 | 41.2 |
| 6 | Florida International | 7 | 36 | 305 | 5.1 | 43.6 |
| 7 | Rice | 6 | 33 | 270 | 5.5 | 45.0 |
| 8 | Charlotte | 6 | 41 | 402 | 6.8 | 67.0 |
| 9 | Western Kentucky | 7 | 48 | 423 | 6.9 | 60.4 |
| 10 | UTSA | 6 | 44 | 381 | 7.3 | 63.5 |
| 11 | Southern Mississippi | 6 | 49 | 416 | 8.2 | 69.3 |
| 12 | North Texas | 6 | 51 | 478 | 8.5 | 79.7 |
| 13 | Marshall | 7 | 64 | 625 | 9.1 | 89.3 |